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genLoom result

Cellranger              E2h_Amp         00:41:51
Velocyto                E2h_Amp         01:18:58
Cellranger              E2h_Isth        00:36:17
Velocyto                E2h_Isth        01:03:43
Cellranger              P24h_Amp        00:37:34
Velocyto                P24h_Amp        01:08:37
Cellranger              P24h_Isth       00:37:13
Velocyto                P24h_Isth       01:02:42
Cellranger              P2h_Amp         00:35:48
Velocyto                P2h_Amp         01:08:04
Cellranger              P2h_Isth        00:39:39
Velocyto                P2h_Isth        01:17:45
Cellranger              V2h_Amp         00:45:23
Velocyto                V2h_Amp         01:24:31
Cellranger              V2h_Isth        00:38:21
Velocyto                V2h_Isth        01:12:04

Using this command:
genLoom -g /home/scrna/data/refdata/gtf/mouse.gtf -c /home/scrna/data/cellranger-6.0.1 -f /home/scrna/data/raw/210404_A00953_0270_AH3MHNDSX2 -m no -r /home/scrna/data/refdata/mm10-r-102 -o /home/scrna/data/cellranger_out-CR6.0.1-r-102 -l /home/scrna/data/looms-CR6.0.1-r-102 -x auto -w /tmp -t s.winuthayanon@wsu.edu
#Or
genLoom -t s.winuthayanon@wsu.edu -f ./raw/210404_A00953_0270_AH3MHNDSX2/ -c ./cellranger-6.0.1/ -o ./cellranger_out-CR6.0.1-r-102 -l ./looms-CR6.0.1-r-102 -r ./refdata/mm10-r-102/ -w /tmp
#Cellranger-5.0.0 and Velocyto-0.17.17
Cellranger        MM20567   01:00:34
Velocyto          MM20567   04:18:59
Cellranger        B4A_3_Isth2_5d    00:33:36
Velocyto          B4A_3_Isth2_5d    00:59:12
Cellranger        B3A_2_Amp2_5d     00:25:57
Velocyto          B3A_2_Amp2_5d     00:42:07
Cellranger        Undetermined_2277         00:10:49
Velocyto          Undetermined_2277         00:08:52
Cellranger        I_Ctr     00:24:08
Velocyto          I_Ctr     00:55:34
Cellranger        I_2_5d    00:23:17
Velocyto          I_2_5d    01:00:37
Cellranger        I_1_5d    00:20:09
Velocyto          I_1_5d    00:47:33
Cellranger        I_0_5d    00:20:56
Velocyto          I_0_5d    00:49:58
Cellranger        Undetermined_2276         00:09:24
Velocyto          Undetermined_2276         00:06:16
Cellranger        A_Ctr     00:22:03
Velocyto          A_Ctr     00:51:09
Cellranger        A_2_5d    00:25:34
Velocyto          A_2_5d    01:00:40
Cellranger        A_1_5d    00:20:56
Velocyto          A_1_5d    00:49:38
Cellranger        A_0_5d    00:24:31
Velocyto          A_0_5d    00:55:06
Cellranger        V24Is     00:22:03
Velocyto          V24Is     00:42:48
Cellranger        V24Am     00:13:50
Velocyto          V24Am     00:31:29
Cellranger        P24Is     00:21:24
Velocyto          P24Is     00:39:00
Cellranger        P24Am     00:10:29
Velocyto          P24Am     00:18:50
Cellranger        E24Is     00:15:33
Velocyto          E24Is     00:32:43
Cellranger        E24Am     00:17:24
Velocyto          E24Am     00:33:12
Cellranger        Estrus    01:13:17
Velocyto          Estrus    02:38:00
Cellranger        WTI       00:21:38
Velocyto          WTI       00:35:36
Cellranger        WTA       00:26:17
Velocyto          WTA       00:47:29
Cellranger        cKOI      00:39:59
Velocyto          cKOI      01:27:41
Cellranger        cKOA      00:34:28
Velocyto          cKOA      01:07:50
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