Cellranger E2h_Amp 00:41:51
Velocyto E2h_Amp 01:18:58
Cellranger E2h_Isth 00:36:17
Velocyto E2h_Isth 01:03:43
Cellranger P24h_Amp 00:37:34
Velocyto P24h_Amp 01:08:37
Cellranger P24h_Isth 00:37:13
Velocyto P24h_Isth 01:02:42
Cellranger P2h_Amp 00:35:48
Velocyto P2h_Amp 01:08:04
Cellranger P2h_Isth 00:39:39
Velocyto P2h_Isth 01:17:45
Cellranger V2h_Amp 00:45:23
Velocyto V2h_Amp 01:24:31
Cellranger V2h_Isth 00:38:21
Velocyto V2h_Isth 01:12:04
Using this command:
genLoom -g /home/scrna/data/refdata/gtf/mouse.gtf -c /home/scrna/data/cellranger-6.0.1 -f /home/scrna/data/raw/210404_A00953_0270_AH3MHNDSX2 -m no -r /home/scrna/data/refdata/mm10-r-102 -o /home/scrna/data/cellranger_out-CR6.0.1-r-102 -l /home/scrna/data/looms-CR6.0.1-r-102 -x auto -w /tmp -t s.winuthayanon@wsu.edu
#Or
genLoom -t s.winuthayanon@wsu.edu -f ./raw/210404_A00953_0270_AH3MHNDSX2/ -c ./cellranger-6.0.1/ -o ./cellranger_out-CR6.0.1-r-102 -l ./looms-CR6.0.1-r-102 -r ./refdata/mm10-r-102/ -w /tmp
#Cellranger-5.0.0 and Velocyto-0.17.17
Cellranger MM20567 01:00:34
Velocyto MM20567 04:18:59
Cellranger B4A_3_Isth2_5d 00:33:36
Velocyto B4A_3_Isth2_5d 00:59:12
Cellranger B3A_2_Amp2_5d 00:25:57
Velocyto B3A_2_Amp2_5d 00:42:07
Cellranger Undetermined_2277 00:10:49
Velocyto Undetermined_2277 00:08:52
Cellranger I_Ctr 00:24:08
Velocyto I_Ctr 00:55:34
Cellranger I_2_5d 00:23:17
Velocyto I_2_5d 01:00:37
Cellranger I_1_5d 00:20:09
Velocyto I_1_5d 00:47:33
Cellranger I_0_5d 00:20:56
Velocyto I_0_5d 00:49:58
Cellranger Undetermined_2276 00:09:24
Velocyto Undetermined_2276 00:06:16
Cellranger A_Ctr 00:22:03
Velocyto A_Ctr 00:51:09
Cellranger A_2_5d 00:25:34
Velocyto A_2_5d 01:00:40
Cellranger A_1_5d 00:20:56
Velocyto A_1_5d 00:49:38
Cellranger A_0_5d 00:24:31
Velocyto A_0_5d 00:55:06
Cellranger V24Is 00:22:03
Velocyto V24Is 00:42:48
Cellranger V24Am 00:13:50
Velocyto V24Am 00:31:29
Cellranger P24Is 00:21:24
Velocyto P24Is 00:39:00
Cellranger P24Am 00:10:29
Velocyto P24Am 00:18:50
Cellranger E24Is 00:15:33
Velocyto E24Is 00:32:43
Cellranger E24Am 00:17:24
Velocyto E24Am 00:33:12
Cellranger Estrus 01:13:17
Velocyto Estrus 02:38:00
Cellranger WTI 00:21:38
Velocyto WTI 00:35:36
Cellranger WTA 00:26:17
Velocyto WTA 00:47:29
Cellranger cKOI 00:39:59
Velocyto cKOI 01:27:41
Cellranger cKOA 00:34:28
Velocyto cKOA 01:07:50
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